I have run ChkDsk with the current Rollback versi0n (v9.1) many, many times and have had no problem. I believe it works due to the fact that it uses some Windows facilities (basic drivers, etc.) to do its job, and I believe one of those facilities runs through the SHIELD special Rollback driver preserving Rollback's integrity.
An older version of Rollback (v8?) did have some sort of problem but I don't think that's around anymore.
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